Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Genes Targeted by hsa-mir-653 in CA Breast Sorlie Cluster 2 Table contains all genes in the CA Breast Sorlie cluster number 2. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-653 23071 ERP44 endoplasmic reticulum protein 44 [Source:HGNC Symbol;Acc:18311] P T 10920 COPS8 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) [Source:HGNC Symbol;Acc:24335] zzz999 5366 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:9108] zzz999 9184 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) [Source:HGNC Symbol;Acc:1151] zzz999 7531 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:HGNC Symbol;Acc:12851] P T 23530 NNT nicotinamide nucleotide transhydrogenase [Source:HGNC Symbol;Acc:7863] P T 57704 GBA2 glucosidase, beta (bile acid) 2 [Source:HGNC Symbol;Acc:18986] zzz999 64344 HIF3A hypoxia inducible factor 3, alpha subunit [Source:HGNC Symbol;Acc:15825] zzz999 93986 FOXP2 forkhead box P2 [Source:HGNC Symbol;Acc:13875] zzz999 6845 VAMP7 vesicle-associated membrane protein 7 [Source:HGNC Symbol;Acc:11486] zzz999 10629 TAF6L TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa [Source:HGNC Symbol;Acc:17305] zzz999 6760 SS18 synovial sarcoma translocation, chromosome 18 [Source:HGNC Symbol;Acc:11340] zzz999 5289 PIK3C3 phosphoinositide-3-kinase, class 3 [Source:HGNC Symbol;Acc:8974] zzz999 85364 ZCCHC3 zinc finger, CCHC domain containing 3 [Source:HGNC Symbol;Acc:16230] zzz999 11100 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 [Source:HGNC Symbol;Acc:17011] zzz999 116987 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 [Source:HGNC Symbol;Acc:16922] zzz999 55017 C14orf119 chromosome 14 open reading frame 119 [Source:HGNC Symbol;Acc:20270] T 79869 CPSF7 cleavage and polyadenylation specific factor 7, 59kDa [Source:HGNC Symbol;Acc:30098] zzz999 7918 GPANK1 G patch domain and ankyrin repeats 1 [Source:HGNC Symbol;Acc:13920] zzz999 55322 C5orf22 chromosome 5 open reading frame 22 [Source:HGNC Symbol;Acc:25639] zzz999 10558 SPTLC1 serine palmitoyltransferase, long chain base subunit 1 [Source:HGNC Symbol;Acc:11277] P T 10900 RUNDC3A RUN domain containing 3A [Source:HGNC Symbol;Acc:16984] zzz999 9486 CHST10 carbohydrate sulfotransferase 10 [Source:HGNC Symbol;Acc:19650] zzz999 399979 SNX19 sorting nexin 19 [Source:HGNC Symbol;Acc:21532] zzz999 2073 ERCC5 excision repair cross-complementing rodent repair deficiency, complementation group 5 [Source:HGNC Symbol;Acc:3437] zzz999 23378 RRP8 ribosomal RNA processing 8, methyltransferase, homolog (yeast) [Source:HGNC Symbol;Acc:29030] zzz999 8886 DDX18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:HGNC Symbol;Acc:2741] zzz999 493911 PHOSPHO2 phosphatase, orphan 2 [Source:HGNC Symbol;Acc:28316] zzz999 84707 BEX2 brain expressed X-linked 2 [Source:HGNC Symbol;Acc:30933] zzz999 5558 zzz999 zzz999 zzz999 8738 CRADD CASP2 and RIPK1 domain containing adaptor with death domain [Source:HGNC Symbol;Acc:2340] T 8061 FOSL1 FOS-like antigen 1 [Source:HGNC Symbol;Acc:13718] zzz999 5977 DPF2 D4, zinc and double PHD fingers family 2 [Source:HGNC Symbol;Acc:9964] zzz999 5411 PNN pinin, desmosome associated protein [Source:HGNC Symbol;Acc:9162] zzz999 11168 PSIP1 PC4 and SFRS1 interacting protein 1 [Source:HGNC Symbol;Acc:9527] zzz999 55165 CEP55 centrosomal protein 55kDa [Source:HGNC Symbol;Acc:1161] zzz999 4076 CAPRIN1 cell cycle associated protein 1 [Source:HGNC Symbol;Acc:6743] P T 5019 OXCT1 3-oxoacid CoA transferase 1 [Source:HGNC Symbol;Acc:8527] zzz999 55288 RHOT1 ras homolog gene family, member T1 [Source:HGNC Symbol;Acc:21168] zzz999 2571 GAD1 glutamate decarboxylase 1 (brain, 67kDa) [Source:HGNC Symbol;Acc:4092] zzz999 9440 MED17 mediator complex subunit 17 [Source:HGNC Symbol;Acc:2375] zzz999 5537 PPP6C protein phosphatase 6, catalytic subunit [Source:HGNC Symbol;Acc:9323] zzz999 10658 CELF1 CUGBP, Elav-like family member 1 [Source:HGNC Symbol;Acc:2549] zzz999 6240 RRM1 ribonucleotide reductase M1 [Source:HGNC Symbol;Acc:10451] zzz999 3189 HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:HGNC Symbol;Acc:5043] zzz999 9868 TOMM70A translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:11985] zzz999 7023 TFAP4 transcription factor AP-4 (activating enhancer binding protein 4) [Source:HGNC Symbol;Acc:11745] zzz999 8880 FUBP1 far upstream element (FUSE) binding protein 1 [Source:HGNC Symbol;Acc:4004] zzz999 55216 C11orf57 chromosome 11 open reading frame 57 [Source:HGNC Symbol;Acc:25569] zzz999 5026 P2RX5 purinergic receptor P2X, ligand-gated ion channel, 5 [Source:HGNC Symbol;Acc:8536] zzz999 342908 ZNF404 zinc finger protein 404 [Source:HGNC Symbol;Acc:19417] zzz999 27316 RBMX RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910] P T 3978 LIG1 ligase I, DNA, ATP-dependent [Source:HGNC Symbol;Acc:6598] zzz999 9125 RQCD1 RCD1 required for cell differentiation1 homolog (S. pombe) [Source:HGNC Symbol;Acc:10445] zzz999 9584 RBM39 RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923] zzz999 55014 STX17 syntaxin 17 [Source:HGNC Symbol;Acc:11432] P T

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